Thermo Fisher Scientific Axiom Caprine Genotyping v2 Array, 384HT format

Axiom™ Caprine Genotyping v2 Array, 384HT format

The Axiom Caprine Genotyping v2 Array is part of the Axiom Agrigenomics Genotyping solution, where target genomic DNA is prepared and processed on the GeneTitan Multi-Channel Instrument. The automated workflow includes hybridization, staining, washing, imaging, and generation of genotyping data for downstream analysis.

This array was developed in collaboration with the International Goat Genome Consortium and the VarGoats Consortium. It integrates SNPs from the Illumina Goat_IGGC_65K_v2 and IMAGE 10K goat chip datasets (more info (PDF)), and includes 59,795 SNPs and 265 structural variants (insertions, deletions, duplications).

This array is also available in mini-96 format.

Features

• Updated design including the original goat SNP panel for compatibility with previous studies
• Innovative inclusion of 265 structural variants, targeting insertions, deletions, and duplications
• High-throughput design optimized for broad genome coverage and informative SNP selection

Array Content

• 59,795 SNPs selected for high-throughput production arrays
• Includes SNPs with diverse MAF profiles, SNPs from underrepresented breeds, mitochondrial markers, Y markers, and structural variants
• Designed to bridge current GBS data and fill genomic gaps

Applications

• Genome-wide association studies (GWAS)
• Molecular breeding: association mapping and genomic selection
• Custom array creation using validated SNPs from this array

Required Products

• GeneChip Command Console Software
• GeneTitan Multi-Channel Instrument
• Axiom Analysis Suite Software
• Axiom Long Format Export Tool (AxLE)

Specifications